in_subset
has_exact_synonym
definition
has_related_synonym
imported from
database_cross_reference
has_alternative_id
has_obo_namespace
has_narrow_synonym
has_broad_synonym
age
A time quality inhering in a bearer by virtue of how long the bearer has existed.
PATO:0000011
quality
color
A composite chromatic quality composed of hue, saturation and intensity parts.
PATO:0000014
PATO:0000020
colour
quality
relative color
biological sex
An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
PATO:0000047
quality
intensity
A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force.
PATO:0000049
quality
morphology
A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
PATO:0000051
quality
shape
A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
PATO:0000052
PATO:0001647
Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects.
quality
relational shape quality
spatial pattern
A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts.
PATO:0000060
PATO:0000132
PATO:0001565
distribution
pattern
quality
qualitative
PATO:0000068
TODO: define this or obsolete it and move children somewhere else.
quality
size
A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
PATO:0000117
quality
length
A 1-D extent quality which is equal to the distance between two points.
PATO:0000122
quality
structure
A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
PATO:0000141
PATO:0001452
quality
relational structural quality
texture
A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
PATO:0000150
quality
time
A quality in which events occur in sequence.
PATO:0000165
quality
bright
1
PATO:0000325
quality
female
A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
PATO:0000383
quality
male
A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
PATO:0000384
quality
branched
A branchiness quality inhering in a bearer by virtue of the bearer's having branches.
PATO:0000402
quality
ramified
ramiform
circular
A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.
PATO:0000411
quality
round
rounded
absent
A quality denoting the lack of an entity.
Example: [ E=wing Q=absent ] -applies to an organism that lacks wings. Note that this is the reciprocal quality to the relational quality "lacks all parts of type". This means that [E=wing Q=absent] is replaceable with [E=organism Q=lacks_all_parts_of_type E2=Wing]. The latter is preferable as it allows greater precision in stating what is lacking from where. E.g. We can say [E=spermatocyte Q=lacks_all_parts_of_type E2=aster] to describe spermatocytes that have no asters.
PATO:0000462
PATO:0001996
absence
absent from organism
quality
present
A quality inhering in a bearer by virtue of the bearer's existence.
PATO:0000467
present in organism
quality
increased length
A length quality which is relatively large.
PATO:0000573
long
quality
decreased length
A length quality which is relatively small.
PATO:0000574
quality
short
shortened
stubby
hypotrophic
A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ).
PATO:0000412
PATO:0000585
quality
shrunken
decreased width
A width which is relatively small.
PATO:0000599
narrow
quality
increased width
A width which is relatively large.
PATO:0000600
broad
quality
wide
wide/broad
localised
A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location.
PATO:0000627
focal
quality
apoptotic
A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis.
GO:0006915
PATO:0000638
quality
volume
A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.
PATO:0000918
quality
width
A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
PATO:0000921
This term is for curator easiness - we might consider obsoleting this but we have to consider how curators are going to represent them if we do.
breadth
quality
permeable
A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a liquid (as by osmosis or diffusion).
PATO:0000982
porous
quality
physical quality
A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
PATO:0001018
PATO:0002079
Wikipedia:Physical_property
quality
relational physical quality
elongated
A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width.
PATO:0001154
quality
optical quality
An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
PATO:0001300
quality
area
A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.
PATO:0001323
quality
diameter
A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
PATO:0001334
quality
cellular quality
A monadic quality of continuant that exists at the cellular level of organisation.
PATO:0001396
quality
condensed
A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together.
PATO:0001485
PATO:0001840
compact
compressed
dense
quality
squashed
functionality
A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s).
PATO:0001509
quality
focus
An optical quality where light rays originating from a point on the object converge.
PATO:0001516
quality
blurry
An optical quality inhering in a bearer by virtue of the bearer's lacking focus.
PATO:0001518
quality
distributed
A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up.
PATO:0001513
PATO:0001566
diffuse
quality
scattered
aggregated
A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole.
PATO:0001629
clustered
quality
1-D extent
1-D size
A size quality inhering in an bearer by virtue of the bearer's extension in one dimension.
PATO:0001708
quality
2-D extent
2-D size
A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions.
PATO:0001709
quality
3-D extent
3D size
A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.
PATO:0001710
quality
increased intensity
An intensity which is relatively high.
PATO:0001782
high intensity
quality
decreased intensity
An intensity which is relatively low.
PATO:0001783
low intensity
quality
multi-localised
A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations.
PATO:0001791
multi-focal
quality
fasciculated
A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve.
PATO:0001861
fascicled
quality
blistered
A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer.
PATO:0001928
blistering
quality
defasciculated
A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated.
PATO:0001959
quality
organismal quality
A quality that inheres in an entire organism or part of an organism.
PATO:0001995
quality
star shaped
2009-07-01T01:48:19Z
A shape quality inhering in a bearer by virtue of the bearer's being arranged like rays or radii; radiating from a common center.
George Gkoutos
PATO:0002065
quality
stellate
molecular quality
2010-03-10T03:18:15Z
A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.
George Gkoutos
PATO:0002061
PATO:0002182
quality
relational molecular quality
phosphorylated
2010-07-09T01:50:14Z
A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group.
PATO:0002220
george
quality
dephosphorylated
2010-09-16T09:04:21Z
A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group.
PATO:0002263
george
quality
active
2012-01-31T04:52:04Z
A quality of an physical object that is currently realizing one of its functions.
PATO:0002354
gkoutos
quality
inactive
2012-01-31T04:52:14Z
A quality of a physical object that is currently realizing none of its functions.
PATO:0002355
gkoutos
quality
shortened
2012-04-18T06:31:29Z
A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width.
PATO:0002364
gkoutos
quality