in_subset
type: AnnotationProperty

has_exact_synonym
type: AnnotationProperty

definition
type: AnnotationProperty

has_related_synonym
type: AnnotationProperty

imported from
type: AnnotationProperty

database_cross_reference
type: AnnotationProperty

has_alternative_id
type: AnnotationProperty

has_obo_namespace
type: AnnotationProperty

has_narrow_synonym
type: AnnotationProperty

has_broad_synonym
type: AnnotationProperty

age
type: Class
subclass of: time
definition: A time quality inhering in a bearer by virtue of how long the bearer has existed.
id: PATO:0000011
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim
in_subset: scalar slim

color
type: Class
subclass of: optical quality
definition: A composite chromatic quality composed of hue, saturation and intensity parts.
id: PATO:0000014
has_alternative_id: PATO:0000020
has_exact_synonym: colour
has_obo_namespace: quality
has_exact_synonym: relative color
imported from: pato.owl
in_subset: attribute slim

biological sex
type: Class
subclass of: organismal quality
definition: An organismal quality inhering in a bearer by virtue of the bearer's ability to undergo sexual reproduction in order to differentiate the individuals or types involved.
id: PATO:0000047
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

intensity
type: Class
subclass of: physical quality
definition: A quality inhering in a bearer by virtue of the bearer's possessing or displaying a distinctive feature in type or degree or effect or force.
id: PATO:0000049
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

morphology
type: Class
subclass of: BAO_0002928
definition: A quality of a single physical entity inhering in the bearer by virtue of the bearer's size or shape or structure.
id: PATO:0000051
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

shape
type: Class
subclass of: morphology
definition: A morphological quality inhering in a bearer by virtue of the bearer's ratios of distances between its features (points, edges, surfaces and also holes etc).
id: PATO:0000052
has_alternative_id: PATO:0001647
comment: Shapes are invariant on size transformations. Shapes can be subdivided into 2D and 3D shapes, We can also make a distinction between shapes of complete self-connected objects, and shapes of parts of objects.
has_obo_namespace: quality
has_exact_synonym: relational shape quality
imported from: pato.owl
in_subset: attribute slim

spatial pattern
type: Class
subclass of: molecular quality
definition: A spatial quality inhering in a bearer by virtue of the bearer's exhibiting repetition of placement of its parts.
id: PATO:0000060
has_alternative_id: PATO:0000132
has_alternative_id: PATO:0001565
has_exact_synonym: distribution
has_related_synonym: pattern
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

qualitative
type: Class
subclass of: BAO_0002928
id: PATO:0000068
comment: TODO: define this or obsolete it and move children somewhere else.
has_obo_namespace: quality
imported from: pato.owl

size
type: Class
subclass of: morphology
definition: A morphology quality inhering in a bearer by virtue of the bearer's physical magnitude.
id: PATO:0000117
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim
in_subset: scalar slim

length
type: Class
subclass of: 1-D extent
definition: A 1-D extent quality which is equal to the distance between two points.
id: PATO:0000122
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim
in_subset: mpath slim
in_subset: scalar slim

structure
type: Class
subclass of: morphology
definition: A morphology quality inhering in a bearer by virtue of the bearer's relative position, shape, arrangements and connectivity of an organism's various parts; the pattern underlying its form.
id: PATO:0000141
has_alternative_id: PATO:0001452
has_obo_namespace: quality
has_exact_synonym: relational structural quality
imported from: pato.owl
in_subset: attribute slim

texture
type: Class
subclass of: morphology
definition: A morphologic quality inhering in a bearer by virtue of the bearer's relative size, organization and distribution of its surface elements or the representation or invention of the appearance of its surface; visual and tactile surface characteristics.
id: PATO:0000150
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

time
type: Class
subclass of: physical quality
definition: A quality in which events occur in sequence.
id: PATO:0000165
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim
in_subset: scalar slim

bright
type: Class
subclass of: intensity
deprecated: 1
id: PATO:0000325
has_obo_namespace: quality
imported from: pato.owl

female
type: Class
subclass of: biological sex
definition: A biological sex quality inhering in an individual or a population that only produces gametes that can be fertilised by male gametes.
id: PATO:0000383
has_obo_namespace: quality
imported from: pato.owl
in_subset: mpath slim
in_subset: value slim

male
type: Class
subclass of: biological sex
definition: A biological sex quality inhering in an individual or a population whose sex organs contain only male gametes.
id: PATO:0000384
has_obo_namespace: quality
imported from: pato.owl
in_subset: mpath slim
in_subset: value slim

branched
type: Class
subclass of: shape
definition: A branchiness quality inhering in a bearer by virtue of the bearer's having branches.
id: PATO:0000402
has_obo_namespace: quality
has_exact_synonym: ramified
has_exact_synonym: ramiform
imported from: pato.owl
in_subset: cell quality
in_subset: mpath slim
in_subset: value slim

circular
type: Class
subclass of: shape
definition: A shape quality inhering in a bearer by virtue of the bearer's being such that every part of the surface or the circumference is equidistant from the center.
id: PATO:0000411
has_obo_namespace: quality
has_related_synonym: round
has_related_synonym: rounded
imported from: pato.owl
in_subset: cell quality
in_subset: mpath slim
in_subset: value slim

absent
type: Class
subclass of: qualitative
definition: A quality denoting the lack of an entity.
comment: Example: [ E=wing Q=absent ] -applies to an organism that lacks wings. Note that this is the reciprocal quality to the relational quality "lacks all parts of type". This means that [E=wing Q=absent] is replaceable with [E=organism Q=lacks_all_parts_of_type E2=Wing]. The latter is preferable as it allows greater precision in stating what is lacking from where. E.g. We can say [E=spermatocyte Q=lacks_all_parts_of_type E2=aster] to describe spermatocytes that have no asters.
id: PATO:0000462
has_alternative_id: PATO:0001996
has_exact_synonym: absence
has_exact_synonym: absent from organism
has_obo_namespace: quality
imported from: pato.owl
in_subset: absent slim
in_subset: mpath slim
in_subset: value slim

present
type: Class
subclass of: qualitative
definition: A quality inhering in a bearer by virtue of the bearer's existence.
id: PATO:0000467
has_related_synonym: present in organism
has_obo_namespace: quality
imported from: pato.owl
in_subset: absent slim
in_subset: value slim

increased length
type: Class
subclass of: length
definition: A length quality which is relatively large.
id: PATO:0000573
has_exact_synonym: long
has_obo_namespace: quality
imported from: pato.owl
in_subset: value slim

decreased length
type: Class
subclass of: length
definition: A length quality which is relatively small.
id: PATO:0000574
has_obo_namespace: quality
has_exact_synonym: short
has_related_synonym: shortened
has_related_synonym: stubby
imported from: pato.owl
in_subset: value slim

hypotrophic
type: Class
subclass of: volume
definition: A decreased size quality inhering in a bearer by virtue of the bearer's exhibiting reduced size of a cell or constituent group of cells (for example, organ).
has_alternative_id: PATO:0000412
id: PATO:0000585
has_obo_namespace: quality
has_exact_synonym: shrunken
imported from: pato.owl
in_subset: mpath slim
in_subset: value slim

decreased width
type: Class
subclass of: width
definition: A width which is relatively small.
id: PATO:0000599
has_related_synonym: narrow
has_obo_namespace: quality
imported from: pato.owl
in_subset: value slim

increased width
type: Class
subclass of: width
definition: A width which is relatively large.
id: PATO:0000600
has_related_synonym: broad
has_obo_namespace: quality
has_related_synonym: wide
has_related_synonym: wide/broad
imported from: pato.owl
in_subset: value slim

localised
type: Class
subclass of: spatial pattern
definition: A spatial pattern quality inhering in a bearer by virtue of the bearer's being confined or restricted to a particular location.
id: PATO:0000627
has_exact_synonym: focal
has_obo_namespace: quality
imported from: pato.owl
in_subset: mpath slim
in_subset: value slim

apoptotic
type: Class
subclass of: structure
definition: A structural quality inhering in a bearer by virtue of the bearer's consisting of blebbing of the nucleus and DNA fragmentation due to the cell undergoing a specific form of programmed cell death termed apoptosis.
database_cross_reference: GO:0006915
id: PATO:0000638
has_obo_namespace: quality
imported from: pato.owl
in_subset: value slim

volume
type: Class
subclass of: 3-D extent
definition: A 3-D extent quality inhering in a bearer by virtue of the bearer's amount of 3-dimensional space it occupies.
id: PATO:0000918
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim
in_subset: mpath slim
in_subset: scalar slim

width
type: Class
subclass of: 1-D extent
definition: A 1-D extent quality which is equal to the distance from one side of an object to another side which is opposite.
id: PATO:0000921
comment: This term is for curator easiness - we might consider obsoleting this but we have to consider how curators are going to represent them if we do.
has_related_synonym: breadth
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim
in_subset: scalar slim

permeable
type: Class
subclass of: structure
definition: A permeability quality inhering in a bearer by virtue of the bearer's being capable to be permeated or pervaded by a liquid (as by osmosis or diffusion).
id: PATO:0000982
has_related_synonym: porous
has_obo_namespace: quality
imported from: pato.owl
in_subset: disposition slim
in_subset: value slim

physical quality
type: Class
subclass of: BAO_0002928
definition: A quality of a physical entity that exists through action of continuants at the physical level of organisation in relation to other entities.
id: PATO:0001018
has_alternative_id: PATO:0002079
database_cross_reference: Wikipedia:Physical_property
has_obo_namespace: quality
has_exact_synonym: relational physical quality
imported from: pato.owl
in_subset: attribute slim

elongated
type: Class
subclass of: shape
definition: A quality inhering in a bearer by virtue of the bearer's length being notably higher than its width.
id: PATO:0001154
has_obo_namespace: quality
imported from: pato.owl
in_subset: value slim

optical quality
type: Class
subclass of: physical quality
definition: An EM radiation quality in which the EM radiation is within the fiat range of the spectrum visible deemed to be light.
id: PATO:0001300
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

area
type: Class
subclass of: 2-D extent
definition: A 2-D extent quality inhering in a bearer by virtue of the bearer's two dimensional extent.
id: PATO:0001323
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim
in_subset: mpath slim
in_subset: scalar slim

diameter
type: Class
subclass of: 1-D extent
definition: A length quality which is equal to the length of any straight line segment that passes through the center of a circle and whose endpoints are on the circular boundary.
id: PATO:0001334
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim
in_subset: mpath slim
in_subset: scalar slim

cellular quality
type: Class
subclass of: BAO_0002928
definition: A monadic quality of continuant that exists at the cellular level of organisation.
id: PATO:0001396
has_obo_namespace: quality
imported from: pato.owl

condensed
type: Class
subclass of: structure
definition: A structural quality inhering in a bearer by virtue of the bearer's being thicker or more closely packed together; pressed tightly together.
id: PATO:0001485
has_alternative_id: PATO:0001840
has_broad_synonym: compact
has_exact_synonym: compressed
has_related_synonym: dense
has_obo_namespace: quality
has_exact_synonym: squashed
imported from: pato.owl
in_subset: mpath slim
in_subset: value slim

functionality
type: Class
subclass of: molecular quality
definition: A quality of a single physical entity that arises by virtue of whether the bearer exhibits the ability to perform a regular function(s).
id: PATO:0001509
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim
in_subset: disposition slim
in_subset: scalar slim

focus
type: Class
subclass of: optical quality
definition: An optical quality where light rays originating from a point on the object converge.
id: PATO:0001516
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

blurry
type: Class
subclass of: intensity
definition: An optical quality inhering in a bearer by virtue of the bearer's lacking focus.
id: PATO:0001518
has_obo_namespace: quality
imported from: pato.owl
in_subset: value slim

distributed
type: Class
subclass of: spatial pattern
definition: A spatial pattern inhering in a bearer by virtue of the bearer's being spread out or scattered about or divided up.
has_alternative_id: PATO:0001513
id: PATO:0001566
has_exact_synonym: diffuse
has_obo_namespace: quality
has_exact_synonym: scattered
imported from: pato.owl
in_subset: mpath slim
in_subset: value slim

aggregated
type: Class
subclass of: spatial pattern
definition: A spatial pattern inhering in a bearer by virtue of the bearer's being gathered or tending to gather into a mass or whole.
id: PATO:0001629
has_exact_synonym: clustered
has_obo_namespace: quality
imported from: pato.owl
in_subset: mpath slim
in_subset: value slim

1-D extent
type: Class
subclass of: size
has_exact_synonym: 1-D size
definition: A size quality inhering in an bearer by virtue of the bearer's extension in one dimension.
id: PATO:0001708
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

2-D extent
type: Class
subclass of: size
has_exact_synonym: 2-D size
definition: A size quality inhering in an bearer by virtue of the bearer's extension in two dimensions.
id: PATO:0001709
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

3-D extent
type: Class
subclass of: size
has_exact_synonym: 3D size
definition: A size quality inhering in an bearer by virtue of the bearer's extension in three dimensions.
id: PATO:0001710
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

increased intensity
type: Class
subclass of: intensity
definition: An intensity which is relatively high.
id: PATO:0001782
has_exact_synonym: high intensity
has_obo_namespace: quality
imported from: pato.owl
in_subset: value slim

decreased intensity
type: Class
subclass of: intensity
definition: An intensity which is relatively low.
id: PATO:0001783
has_exact_synonym: low intensity
has_obo_namespace: quality
imported from: pato.owl
in_subset: value slim

multi-localised
type: Class
subclass of: spatial pattern
definition: A spatial pattern inhering in a bearer by virtue of the bearer's being confined or restricted to multiple locations.
id: PATO:0001791
has_exact_synonym: multi-focal
has_obo_namespace: quality
imported from: pato.owl
in_subset: mpath slim
in_subset: value slim

fasciculated
type: Class
subclass of: structure
definition: A structural quality inhering in a bearer by virtue of the bearer's forming a bundle of aligned anatomical fibers, as of muscle or nerve.
id: PATO:0001861
has_exact_synonym: fascicled
has_obo_namespace: quality
imported from: pato.owl
in_subset: mpath slim
in_subset: value slim

blistered
type: Class
subclass of: texture
definition: A texture quality inhering in a bearer by virtue of a local accumulation of fluid underneath the surface of the bearer.
id: PATO:0001928
has_narrow_synonym: blistering
has_obo_namespace: quality
imported from: pato.owl
in_subset: mpath slim
in_subset: value slim

defasciculated
type: Class
subclass of: structure
definition: A structural quality inhering in a bearer by virtue of the bearer's in which bundles of aligned anatomical fibers have become separated.
id: PATO:0001959
has_obo_namespace: quality
imported from: pato.owl
in_subset: value slim

organismal quality
type: Class
subclass of: BAO_0002928
definition: A quality that inheres in an entire organism or part of an organism.
id: PATO:0001995
has_obo_namespace: quality
imported from: pato.owl

star shaped
type: Class
subclass of: shape
creation date: 2009-07-01T01:48:19Z
definition: A shape quality inhering in a bearer by virtue of the bearer's being arranged like rays or radii; radiating from a common center.
created by: George Gkoutos
id: PATO:0002065
has_obo_namespace: quality
has_exact_synonym: stellate
imported from: pato.owl
in_subset: cell quality
in_subset: mpath slim
in_subset: value slim

molecular quality
type: Class
subclass of: BAO_0002928
creation date: 2010-03-10T03:18:15Z
definition: A quality which inheres in a molecular entity, a single molecule, atom, ion, radical etc.
created by: George Gkoutos
has_alternative_id: PATO:0002061
id: PATO:0002182
has_obo_namespace: quality
has_exact_synonym: relational molecular quality
imported from: pato.owl

phosphorylated
type: Class
subclass of: BAO_0000672
creation date: 2010-07-09T01:50:14Z
definition: A quality inhering in a protein or a molecule by virtue of the bearer's having a phosphate (PO4) group.
id: PATO:0002220
created by: george
has_obo_namespace: quality
imported from: pato.owl
in_subset: value slim

dephosphorylated
type: Class
subclass of: BAO_0000672
creation date: 2010-09-16T09:04:21Z
definition: A quality inhering in a protein or a molecule by virtue of the bearer's lacking a phosphate (PO4) group.
id: PATO:0002263
created by: george
has_obo_namespace: quality
imported from: pato.owl
in_subset: value slim

active
type: Class
subclass of: functionality
creation date: 2012-01-31T04:52:04Z
definition: A quality of an physical object that is currently realizing one of its functions.
id: PATO:0002354
created by: gkoutos
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

inactive
type: Class
subclass of: functionality
creation date: 2012-01-31T04:52:14Z
definition: A quality of a physical object that is currently realizing none of its functions.
id: PATO:0002355
created by: gkoutos
has_obo_namespace: quality
imported from: pato.owl
in_subset: attribute slim

shortened
type: Class
subclass of: shape
creation date: 2012-04-18T06:31:29Z
definition: A quality inhering in a bearer by virtue of the bearer's length being notably lower than its width.
id: PATO:0002364
created by: gkoutos
has_obo_namespace: quality
imported from: pato.owl
in_subset: value slim