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BAO
BioAssay Ontology
Created by:
Hande Küçük McGinty, Janice Kranz, Joseph Ostrow, Alex Clark, Yu Lin, Saminda Abeyruwan, Uma Vempati, Kunie Sakurai, Vance Lemmon, Ubbo Visser, John Turner, Stephan Schurer*
Jan 30th 2017
2.3.1
Contact:
Stephan Schurer
stephan dot schurer at gmail dot com
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Opera QEHS
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phosphorylated
A quality of an amino acid residue that has a phosphate group attached to it.
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computational structure analysis
2D structure prediction
PREDATOR structure prediction
PredictProtein structure prediction
3D structure prediction
computational structure solution
computational NMR structure solution
computational X-ray structure solution
computational electron microscopy structure solution
homology modeling
Also known as comparative modeling of protein, refers to constructing an atomic-resolution model of the "target" protein from its amino acid sequence and an experimental three-dimensional structure of a related homologous protein (the "template").
MODELLER homology modeling
SwissModel homology modeling
protein threading
A method of computational protein structure prediction used for protein sequences which have the same fold as proteins of known structures but do not have homologous proteins with known structure.
RAPTOR protein threading
protein threading software used for protein structure prediction, given a primary sequence.
protein-protein docking
global range molecular matching
structure alignment
Structural alignment software attempts to establish equivalences between two or more polymer structures based on their shape and three-dimensional conformation.
distance matrix alignment
DALI breaks the input structures into hexapeptide fragments and calculates a distance matrix by evaluating the contact patterns between successive fragments.
matching molecular models obtained from theory
quantitative structure activity relationship analysis
Mathematical relationships linking chemical structure and pharmacological activity in a quantitative manner for a series of compounds. Methods which can be used in QSAR include various regression and pattern recognition techniques.
linear QSAR
partial least squares QSAR
regression QSAR
non-linear QSAR
neural network QSAR
recursive partitioning QSAR
three dimensional QSAR
Involves the analysis of the quantitative relationship between the biological activity of a set of compounds and their three- dimensional properties using statistical correlation methods.
comparative molecular field analysis
A 3D-QSAR method that uses statistical correlation techniques for the analysis of the quantitative relationship between the biological activity of a set of compounds with a specified alignment, and their three-dimensional electronic and steric properties.
comparative molecular similarity indices analysis
self organizing molecular field analysis
two dimensional QSAR
Cellomics ArrayScan
IN Cell Analyzer
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